thehyve / transmart-batch
tranSMART pipeline alternative to ETL, using Spring Batch
☆9Updated 6 years ago
Alternatives and similar repositories for transmart-batch:
Users that are interested in transmart-batch are comparing it to the libraries listed below
- Efficient, distributed downloads of large files from S3 to HDFS using Spark.☆17Updated 8 years ago
- Google Cloud Dataflow pipelines such as Identity-By-State as well as useful utility classes.☆37Updated last year
- Mirror of Apache Taverna Language (incubating)☆22Updated 2 years ago
- This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster☆17Updated 7 years ago
- tranSMART is a knowledge management platform that enables scientists to develop and refine research hypotheses by investigating correlati…☆71Updated 6 years ago
- A Variant Caller, Distributed. Apache 2 licensed.☆71Updated 6 years ago
- Core components and documentation of the tranSMART platform. https://i2b2transmart.org/☆13Updated 2 years ago
- The Snorocket Description Logic classifier for EL++ with concrete domains support☆23Updated 3 years ago
- Alenka JDBC is a library for accessing and manipulating data with the open-source GPU database Alenka.☆19Updated 10 years ago
- Bpipe - a tool for running and managing bioinformatics pipelines☆235Updated 2 months ago
- Java SDK for the Common Workflow Language standards☆13Updated this week
- ☆31Updated last week
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆40Updated 2 months ago
- Variant calling from sequence reads using cloud computing☆39Updated 11 years ago
- Visualize (.avdl and .proto format) schema files as a UML diagram using Graphviz☆30Updated 6 years ago
- A Java API for high-throughput sequencing data (HTS) formats.☆286Updated last week
- Develop streaming applications for IBM Streams in Python, Java & Scala.☆29Updated 2 years ago
- Secure Cloud Object REsource: file transfer microservice☆18Updated 2 weeks ago
- Apache Commons Weaver☆21Updated 2 weeks ago
- Dockerized TranSMART based on docker-compose☆9Updated 7 years ago
- Apache Spark jobs such as Principal Coordinate Analysis.☆74Updated 8 years ago
- Aggregated SwitchYard repository☆12Updated 7 years ago
- Non-invasive, flexible and ultra-extendable http framework that offers you 3 modes of handling http requests - UseCase driven, low-level …☆15Updated 2 years ago
- Java library providing additional collection interfaces and implementations built on top of Guava☆27Updated last month
- An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company …☆170Updated last week
- Automatically exported from code.google.com/p/segment-trees☆11Updated 9 years ago
- ☆28Updated 8 years ago
- Models and APIs for Genomic data. RETIRED 2018-01-24☆218Updated 2 years ago
- Miscellaneous functionality for manipulating Apache Spark RDDs.☆22Updated 6 years ago
- An app store for scientific workflows, tools, notebooks, and services☆125Updated this week