A repository of update in molecular dynamics field by recent progress in machine learning and deep learning.
☆341Jan 25, 2026Updated 4 months ago
Alternatives and similar repositories for mldl-md-dynamics
Users that are interested in mldl-md-dynamics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- End-To-End Molecular Dynamics (MD) Engine using PyTorch☆707Apr 21, 2026Updated last month
- The Open Forcefield Toolkit provides implementations of the SMIRNOFF format, parameterization engine, and other tools. Documentation avai…☆392Updated this week
- Geometric super-resolution for molecular geometries☆42Jun 15, 2022Updated 3 years ago
- Deep learning meets molecular dynamics.☆189May 3, 2019Updated 7 years ago
- How to analyze molecular dynamics data with PyEMMA☆86May 29, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- TorchANI 2.0 is an open-source library that supports training, development, and research of ANI-style neural network interatomic potentia…☆546May 14, 2026Updated last week
- Flexible storage of chemical topology for molecular simulation☆70May 18, 2026Updated last week
- An open library for the analysis of molecular dynamics trajectories☆716May 4, 2026Updated 3 weeks ago
- [TMLR 2023] Training and simulating MD with ML force fields☆115Oct 30, 2024Updated last year
- An open-source Python package for creating fast and accurate interatomic potentials.☆354Feb 6, 2026Updated 3 months ago
- A python framework to run adaptive Markov state model (MSM) simulation on HPC resources☆17Aug 1, 2025Updated 9 months ago
- An open source Python framework for transition interface and path sampling calculations.☆116May 11, 2026Updated 2 weeks ago
- Python library written in C++ for calculation of local atomic structural environment☆69Apr 30, 2026Updated 3 weeks ago
- Physical validation of molecular simulations☆65Apr 6, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A primer on software development best practices for computational chemistry☆276Dec 5, 2022Updated 3 years ago
- SchNetPack - Deep Neural Networks for Atomistic Systems☆921May 12, 2026Updated 2 weeks ago
- Parameter/topology editor and molecular simulator☆451Apr 9, 2026Updated last month
- Jupyter book and content for "Machine Learning for Molecular Dynamics" course☆13Apr 7, 2022Updated 4 years ago
- Python-centric Cookiecutter for Molecular Computational Chemistry Packages☆456Dec 15, 2025Updated 5 months ago
- DScribe is a python package for creating machine learning descriptors for atomistic systems.☆466Apr 18, 2026Updated last month
- OpenMM plugin to define forces with neural networks☆220Feb 24, 2025Updated last year
- View proteins and trajectories in the terminal☆118Aug 8, 2020Updated 5 years ago
- Experiments with expanded ensembles to explore chemical space☆199Oct 28, 2025Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Quantum Mechanical Bespoke Force Field Derivation Toolkit☆107Jul 5, 2024Updated last year
- Quickly generate, start and analyze benchmarks for molecular dynamics simulations.☆83Sep 5, 2024Updated last year
- A plugin that allows the use of Tensorflow in Hoomd-Blue for GPU-accelerated ML+MD☆33Aug 3, 2024Updated last year
- NanoOpt: Deriving potentials for coarse-grained nanoparticles via potential-matching☆11Oct 8, 2021Updated 4 years ago
- a python package for the interfacial analysis of molecular simulations☆95May 10, 2026Updated 2 weeks ago
- An open, extensible Python framework for GPU-accelerated alchemical free energy calculations.☆202Jul 6, 2023Updated 2 years ago
- A deep learning package for many-body potential energy representation and molecular dynamics☆1,933May 20, 2026Updated last week
- A document for the Living Journal of Computational Molecular Science (LiveCoMS) which describes basic training for molecular simulations …☆118Dec 29, 2018Updated 7 years ago
- Pytorch differentiable molecular dynamics☆187Sep 5, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- learning coarse-grained force fields☆66Nov 30, 2021Updated 4 years ago
- The GB99dms implicit solvent force field for proteins, plus scripts and data☆27Sep 19, 2025Updated 8 months ago
- Repository for material from the 2020 MC/MD Summer Workshop☆14Jul 12, 2024Updated last year
- Development version of plumed 2☆498May 13, 2026Updated 2 weeks ago
- Material for the 3rd i-CoMSE Workshop: Methods for Advanced Sampling☆42May 1, 2023Updated 3 years ago
- the simple alchemistry library☆239Jan 23, 2026Updated 4 months ago
- Differentiate all the things!☆173Jan 9, 2026Updated 4 months ago