hbctraining / Intro-to-rnaseq-hpc-orchestra

Related projects ⓘ

Alternatives and complementary repositories for Intro-to-rnaseq-hpc-orchestra

• mhorlbeck / ScreenProcessing
  ☆64Updated last year
• hbctraining / Intro-to-rnaseq-hpc-salmon
  ☆47Updated 3 years ago
• tobiasrausch / ATACseq
  Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
  ☆74Updated last year
• QuKunLab / ATAC-pipe
  Analysis pipeline for ATAC-seq Data
  ☆60Updated 3 years ago
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆108Updated 2 years ago
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆88Updated last year
• AAlhendi1707 / countToFPKM
  Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
  ☆62Updated 3 years ago
• reskejak / ATAC-seq
  Basic workflow for ATAC-seq analysis
  ☆70Updated 9 months ago
• TrinityCTAT / Trinity_CTAT
  ☆115Updated last year
• xryanglab / RiboCode
  release version
  ☆48Updated 2 years ago
• snakemake-workflows / single-cell-rna-seq
  A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.
  ☆99Updated 2 years ago
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆102Updated 4 months ago
• FenyoLab / L1EM
  Estimate locus specific human LINE-1 expression.
  ☆32Updated 2 years ago
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆115Updated 2 years ago
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆141Updated 3 weeks ago
• CebolaLab / ATAC-seq
  Analysis pipeline for ATAC-seq data
  ☆38Updated last year
• xuzhougeng / R-ChIP-data-analysis
  ☆51Updated 6 years ago
• OlgaVT / Alternative-Splicing-Tools
  A list of alternative splicing analysis resources
  ☆37Updated last week
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆50Updated last year
• bioinfo-ibms-pumc / SCSA
  SCSA: cell type annotation for single-cell RNA-seq data
  ☆82Updated last year
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆77Updated last year
• PierreBSC / Viral-Track
  ☆55Updated 4 years ago
• scottzijiezhang / m6A-seq_analysis_workflow
  A pipeline to process m6A-seq data and down stream analysis.
  ☆43Updated 4 years ago
• Lindseynicer / WGCNA_tutorial
  A step-by-step tutorial for Weighted correlation network analysis (WGCNA)
  ☆61Updated 2 years ago
• harvardinformatics / ATAC-seq
  ☆120Updated 5 years ago
• BioOmics / iSeq
  Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
  ☆129Updated this week
• liulab-dfci / MAGeCK
  Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…
  ☆26Updated 3 years ago
• crazyhottommy / pyflow-ChIPseq
  a snakemake pipeline to process ChIP-seq files from GEO or in-house
  ☆103Updated 4 years ago
• JiekaiLab / scTE
  ☆102Updated 6 months ago
• LiuLabUB / HMMRATAC
  HMMRATAC peak caller for ATAC-seq data
  ☆99Updated last week