Python library and command-line tool for extracting compounds from scientific literature. Written in Python.
☆47Jun 1, 2020Updated 5 years ago
Alternatives and similar repositories for molminer
Users that are interested in molminer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python wrapper for OSRA. Supports R-Group logic and integration with ChemSchematicResolver☆10Apr 4, 2020Updated 6 years ago
- A feeble attempt at molecular recognition (in the literal sense)☆67Dec 13, 2024Updated last year
- [ICCV 23] MolGrapher: Graph-based Visual Recognition of Chemical Structures☆16Oct 27, 2025Updated 6 months ago
- Toolkit for Chemical Reaction Extraction from Scientific Literature (JCIM 2021)☆85Mar 26, 2022Updated 4 years ago
- This repository contains the information related to the benchmark study on openly available OCSR tools☆45May 3, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Extracts data from tables with complicated structures.☆16Mar 14, 2025Updated last year
- OSRA source from http://cactus.nci.nih.gov/osra/☆37Aug 7, 2013Updated 12 years ago
- ChemoPy: freely available python package for computational biology and chemoinformatics.☆14May 30, 2021Updated 4 years ago
- Tool to compute bond and angle force field parameters with the Seminario method☆14Apr 15, 2018Updated 8 years ago
- Code available for the quantitative pharmacophores☆13Sep 7, 2022Updated 3 years ago
- ☆25Sep 26, 2022Updated 3 years ago
- drugdesign.org source of truth☆28Feb 18, 2024Updated 2 years ago
- ☆13Aug 5, 2025Updated 8 months ago
- ChemicalTagger is a tool for semantic text-mining in chemistry.☆46Apr 15, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Chainer implementation of Graph Neural Networks for the Prediction of Substrate-Specific Organic Reaction Conditions☆10Apr 11, 2021Updated 5 years ago
- PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods☆210Sep 22, 2023Updated 2 years ago
- Chemical structure detection and segmentation tool for Journal articles.☆142Feb 25, 2026Updated 2 months ago
- C++/Python Library for Systematic Chemical Space Exploration☆25Dec 21, 2021Updated 4 years ago
- Automatically extract chemical information from scientific documents☆354Jul 27, 2023Updated 2 years ago
- Open Parser for Systematic IUPAC Nomenclature. Chemical name to structure conversion☆212Apr 10, 2026Updated 3 weeks ago
- Derivation of structural alerts from bioactivity data sets☆32Mar 6, 2016Updated 10 years ago
- IUPAC SMILES+ Specification☆42Dec 12, 2023Updated 2 years ago
- Bias-controlled 3D generative framework for structure-based ligand design☆17Nov 2, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 基于osra的化学结构式识别工具☆21Apr 9, 2024Updated 2 years ago
- BigSMILES☆10Jun 16, 2024Updated last year
- ☆13Sep 25, 2022Updated 3 years ago
- Wrapper for RDKit's RunReactants to improve stereochemistry handling☆184Sep 18, 2023Updated 2 years ago
- Prediction of compound synthesis accessibility bashed on reaction knowledge graph☆17May 24, 2022Updated 3 years ago
- Molecular Annotation and Recognition for Curating Unravelled Structures☆24Jan 15, 2026Updated 3 months ago
- Physico-chemical and biological property prediction for small molecules☆12May 3, 2022Updated 4 years ago
- OSCAR (Open Source Chemistry Analysis Routines) is an open source extensible system for the automated annotation of chemistry in scientif…☆40Apr 15, 2026Updated 2 weeks ago
- DeepSMILES - A variant of SMILES for use in machine-learning☆146May 24, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- 3D pharmacophore signatures and fingerprints☆113May 8, 2025Updated 11 months ago
- Twitter retrosynthesis bot☆13Jul 10, 2022Updated 3 years ago
- Official repository for multitask deep learning models.☆18Dec 8, 2020Updated 5 years ago
- GitHub Repository for "Sigma Profiles in Deep Learning: Towards a Universal Molecular Descriptor"☆12Jul 25, 2024Updated last year
- Implementation of Shape and Electrostatic similarity metric in deepFMPO.☆46Jan 27, 2022Updated 4 years ago
- A Python wrapper for the Chemistry Development Kit (CDK)☆38Sep 9, 2025Updated 7 months ago
- This repository provides an implementation of the DTiGEMSplus tool, a network-based method for computational Drug-Target Interaction pred…☆27Sep 28, 2021Updated 4 years ago