A prefix tree (trie) implementation in go
☆40Jul 13, 2024Updated last year
Alternatives and similar repositories for prefixtree
Users that are interested in prefixtree are comparing it to the libraries listed below
Sorting:
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Updated this week
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated 9 months ago
- LMS algorithm for computing edit distance with SIMD optimizations☆11Mar 25, 2024Updated last year
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 7 months ago
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated last year
- Needleman-Wunsch Alignment in Go☆12Nov 9, 2020Updated 5 years ago
- Viroid-like circRNA discovery and analysis suite☆19Nov 11, 2023Updated 2 years ago
- Write-once-read-many table for large datasets.☆27Oct 5, 2023Updated 2 years ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Aug 7, 2023Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids using protein structural information☆42Updated this week
- ☆17Oct 7, 2024Updated last year
- ☆16Jan 21, 2024Updated 2 years ago
- Minimum plain text representation of kmer sets☆16Jan 30, 2025Updated last year
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- Methods to determine sequence element (unitig) presence/absence☆23Nov 24, 2025Updated 3 months ago
- A prefix tree implementation in go☆45Apr 5, 2024Updated last year
- ☆23Sep 9, 2025Updated 5 months ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Aug 22, 2025Updated 6 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆25Nov 19, 2025Updated 3 months ago
- ☆27May 22, 2025Updated 9 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Feb 6, 2023Updated 3 years ago
- ☆30Mar 6, 2025Updated 11 months ago
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆37Oct 29, 2024Updated last year
- Overview of our data for microbial genomic benchmarking☆35Feb 5, 2026Updated 3 weeks ago
- QuickEd is a high-performance exact sequence alignment based on the bound-and-align paradigm.☆28May 5, 2025Updated 9 months ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆30Aug 26, 2024Updated last year
- GOCACHEPROG implementation that uses S3/Minio-compatible storages as a remote storage backend for Go compiler cache.☆48Feb 18, 2026Updated last week
- Build cross-platform binaries for Go☆32Jun 3, 2025Updated 8 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Apr 23, 2025Updated 10 months ago
- A SIMD-accelerated library to compute random minimizers☆39Updated this week
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 26, 2025Updated 7 months ago
- Golang LRU read-through cache backed by a remote store☆32Apr 28, 2016Updated 9 years ago
- cwalk = Concurrent filepath.Walk replacement (Go)☆36Jan 25, 2021Updated 5 years ago
- Golang generic Interval Search Tree☆35May 26, 2025Updated 9 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆38Feb 20, 2026Updated last week
- "Commit information, not traffic" - Vector–Scalar Accumulator (VSA) is a lightweight algorithmic primitive that eliminates write amplific…☆28Dec 2, 2025Updated 3 months ago
- デジモンバイタルブレス/DIGIMON VITAL BRACELET DiM CARD Flash☆10May 12, 2021Updated 4 years ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆36Nov 7, 2025Updated 3 months ago