BiomedSciAI / biomed-multi-view
This repository contains the implementation of the Multi-view Molecular Embedding with Late Fusion (MMELON) architecture. MMELON combines molecular representations from three views — image, graph, and text —to learn a joint embedding that can be finetuned for downstream tasks in chemical and biological property prediction.
☆21Updated last month
Alternatives and similar repositories for biomed-multi-view:
Users that are interested in biomed-multi-view are comparing it to the libraries listed below
- ALL Molecular ML papers from NeurIPS'24.☆43Updated 2 months ago
- ☆11Updated 4 months ago
- Molecular Out-Of-Distribution☆36Updated 11 months ago
- Molecule Graph Generation using Graph Convolutional Networks-based Variational Graph AutoEncoders (VGAE) in PyTorch☆22Updated 2 months ago
- ☆34Updated 3 months ago
- SELFormer: Molecular Representation Learning via SELFIES Language Models☆87Updated last month
- Machine Learning dataset splitting for life sciences.☆26Updated 6 months ago
- ☆19Updated 4 months ago
- MiniMol is a 10M-parameters molecular fingerprinting model pre-trained on >3300 biological and quantum tasks☆15Updated 3 months ago
- Working collection of papers, repos and models of transformer based language models trained or tuned for the Chemical domain, from natura…☆52Updated last year
- Fine-tuning of ChemBERTA LLMs to predict molecules' HIV inhibition replication.☆20Updated last year
- Recursion's molecular foundation model☆37Updated 3 months ago
- ☆24Updated 8 months ago
- HyperPCM: Robust task-conditioned modeling of drug-target interactions☆36Updated 3 months ago
- Transformer-based molecular generative model for antiviral drug design☆16Updated 2 months ago
- Offical repository for the paper "Llamol: a dynamic multi-conditional generative transformer for de novo molecular design" (https://doi.o…☆26Updated 7 months ago
- ☆22Updated 8 months ago
- Atom-in-SMILES tokenizer for SMILES strings.☆34Updated 6 months ago
- Diffusion-based molecule conformer generation☆38Updated 9 months ago
- Sample-efficient Generative Molecular Design using Memory Manipulation☆32Updated 2 months ago
- a multi-property optimization method.☆27Updated last month
- ☆39Updated 7 months ago
- InteractionGraphNet: a Novel and Efficient Deep Graph Representation Learning Framework for Accurate Protein-Ligand Interaction Predictio…☆29Updated 3 years ago
- ☆15Updated 10 months ago
- Multimodal learning for chemical domain, with SMILES and properties.☆36Updated 2 weeks ago
- Reagent prediction with Molecular Transformer. Improvement of data for reaction product prediction in a self-supervised fashion.☆24Updated 3 months ago
- We introduce ibm/biomed.omics.bl.sm.ma-ted-458m. A biomedical foundation model trained over 2 billion biological samples across multiple …☆30Updated last week
- A GFlowNet with a chemical synthesis action space.☆41Updated 2 months ago
- Molecular Set Representation Learning☆46Updated 2 months ago
- Projecting Molecules into Synthesizable Chemical Spaces (ICML 2024)☆33Updated 3 weeks ago