Avo-k / black_numbaView external linksLinks
Python chess engine compiled with Numba (from 7300 to 1500000 nodes/second)
☆18Oct 10, 2021Updated 4 years ago
Alternatives and similar repositories for black_numba
Users that are interested in black_numba are comparing it to the libraries listed below
Sorting:
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 4 years ago
- This repository contains all the solutions of assignments, starter files and other materials related to this specialization.☆10Jan 31, 2021Updated 5 years ago
- Exchange Python-Graph-Objects between networkx, igraph and graph-tools☆12Mar 15, 2024Updated last year
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Sep 26, 2017Updated 8 years ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 2 years ago
- ☆15Feb 14, 2024Updated 2 years ago
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 2 months ago
- Fun project to run your own LLM chat bot using llama.cpp☆11Jun 9, 2023Updated 2 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated last year
- open IPython notebooks for the book of Scientific Computing with Python☆11Jul 16, 2015Updated 10 years ago
- PLSA for sparse matrices implemented with Numba☆11Oct 18, 2016Updated 9 years ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated last year
- Kincore-Standalone2 - Python3 code for calculating the conformational state of typical protein kinases☆17Sep 18, 2023Updated 2 years ago
- PowerBacGWAS: Power calculations for Bacterial GWAS☆13Feb 2, 2022Updated 4 years ago
- WhisperMesh is an advanced chatbot that integrates voice and text interactions, delivering personalized responses through LLM models and …☆15Apr 23, 2025Updated 9 months ago
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 6 years ago
- ☆17Jan 2, 2024Updated 2 years ago
- This BLENDER has been sunsetted☆16Sep 27, 2024Updated last year
- Aho-Corasick automation for large-scale multi-pattern matching. Available for C/C++, Python, and Java on Linux, macOS, and Windows.☆14Oct 29, 2024Updated last year
- Build a map of genes present across a set of microbial genomes☆18Jan 23, 2026Updated 3 weeks ago
- plasmidVerify: plasmid contig verification tool☆15Apr 30, 2020Updated 5 years ago
- Kinship In Mixed Model Analysis of RNA-seq☆14Apr 14, 2025Updated 10 months ago
- FastContext is an optimized Java implementation of ConText algorithm (https://www.ncbi.nlm.nih.gov/pubmed/23920642).☆11Oct 19, 2021Updated 4 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Nov 6, 2025Updated 3 months ago
- Transfer learning for Mutation Effect Prediction☆17Feb 13, 2024Updated 2 years ago
- Insights into the inner workings of transformer models for protein function prediction☆14Feb 9, 2024Updated 2 years ago
- ☆21Jan 29, 2026Updated 2 weeks ago
- MetaCluster: An Open-Source Python Library for Metaheuristic-based Clustering Problems☆16Aug 17, 2025Updated 5 months ago
- 汇集了来自 Gemini (NanoBanana) 、Midjourney、GPT、Flux、Grok以及 Seedream 等多个主流 AI 模型的优质提示词(Prompts)。☆42Feb 8, 2026Updated last week
- AC-DIAMOND is a DNA-protein alignment tool☆16Oct 11, 2023Updated 2 years ago
- [ICML 2024] Official code release accompanying the paper "diff History for Neural Language Agents" (Piterbarg, Pinto, Fergus)☆20Aug 20, 2024Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Updated this week
- PhyloAln: a convenient reference-based tool to align sequences and high-throughput reads for phylogeny and evolution in the omic era☆17Nov 28, 2025Updated 2 months ago
- Simple example for embedding SSE2 assembly in Cython projects☆22May 2, 2017Updated 8 years ago
- Population analysis PIPEline 🛠🧬☆22Feb 3, 2026Updated last week
- ☆16Jan 15, 2025Updated last year
- ☆20Apr 13, 2022Updated 3 years ago
- Correction of palindromes in long reads from PacBio and Nanopore☆14Mar 1, 2022Updated 3 years ago